Package: pheble 0.1.0

pheble: Classifying High-Dimensional Phenotypes with Ensemble Learning

A system for binary and multi-class classification of high-dimensional phenotypic data using ensemble learning. By combining predictions from different classification models, this package attempts to improve performance over individual learners. The pre-processing, training, validation, and testing are performed end-to-end to minimize user input and simplify the process of classification.

Authors:Jay Devine [aut, cre, cph], Benedikt Hallgrimsson [aut]

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NEWS

# Install 'pheble' in R:
install.packages('pheble', repos = c('https://jaydevine.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jaydevine/pheble/issues

Datasets:
  • ph_crocs - Data from: The utility of cranial ontogeny for phylogenetic inference: a case study in crocodylians using geometric morphometrics
  • ph_stickleback - Data from: Sexually mediated phenotypic variation within and between sexes as a continuum structured by ecology: The mosaic nature of skeletal variation across body regions in Threespine stickleback

On CRAN:

2.70 score 236 downloads 10 exports 181 dependencies

Last updated 1 years agofrom:174e2a2ee6. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 17 2024
R-4.5-winNOTENov 17 2024
R-4.5-linuxNOTENov 17 2024
R-4.4-winNOTENov 17 2024
R-4.4-macNOTENov 17 2024
R-4.3-winNOTENov 17 2024
R-4.3-macNOTENov 17 2024

Exports:%>%ph_anomalyph_ctrlph_ensembleph_equateph_evalph_iqrph_outsph_prepph_train

Dependencies:adabagbase64encbitbit64bitopsbslibC50cachemcaretcaToolsclassclassIntclicliprclockcodetoolscoincolorspacecombinatcommonmarkConsRankcpp11crayonCubistdata.tablediagramdigestdoParalleldplyre1071earthelasticnetevaluateevtreefansifarverfastmapfontawesomeforcatsforeachFormulafrbsfsfuturefuture.applygdatagenericsggplot2glmnetglobalsgluegmodelsgowergplotsgtablegtoolshardhathavenhdaHDclassifhighrhmshtmltoolshtmlwidgetshttpuvigraphinumipredisobanditeratorsjquerylibjsonlitekernlabKernSmoothkknnklaRknitrlabelinglabelledlarslaterlatticelavalibcoinlifecyclelistenvlubridatemagrittrMASSMatrixmatrixStatsmdamemoisemgcvmimeminiUIMLmetricsModelMetricsmodeltoolsmultcompmunsellmvtnormnlmennetnumDerivparallellypartypartykitpillarpkgconfigplotmoplotrixplsplyrprettyunitspROCprodlimprogressprogressrpromisesproxypurrrquestionrR.cacheR.methodsS3R.ooR.utilsR6randomForestRANNrappdirsrARPACKRColorBrewerRcppRcppEigenreadrrecipesreshape2rglrlangrlistrmarkdownROCRROSErpartrpartScorerprojrootRSpectrarstudioapisandwichsassscalesshapeshinysourcetoolssparseLDASQUAREMstringistringrstrucchangestylersurvivalTH.datathemistibbletidyrtidyselecttimechangetimeDatetinytextzdbutf8vctrsviridisLitevroomwithrxfunXMLxtableyamlzoo